OCA Atlas for 5YQ7

5YQ7

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BCL, BPH, FE, HEM, KGD, MQE

enzyme

Gene
Ontology

Chain	Function	Process	Component
3, F, 5, R, 1, 9, P, V, J, 7, H, T, N, A, D	electron transporter, transf...
C	electron transfer activity
L
M
U, K, 2, O, G, 6, W, 8, Q, 0, E, S, I, B, 4	electron transporter, transf...

Primary reference

Cryo-EM structure of the RC-LH core complex from an early branching photosynthetic prokaryote., Xin Y, Shi Y, Niu T, Wang Q, Niu W, Huang X, Ding W, Yang L, Blankenship RE, Xu X, Sun F, Nat Commun. 2018 Apr 19;9(1):1568. doi: 10.1038/s41467-018-03881-x. PMID:29674684

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (397 Kb) [Save to disk]

Biological Unit Coordinates (5yq7.pdb1.gz) 357 Kb

LPC: Ligand-Protein Contacts for 5YQ7

CSU: Contacts of Structural Units for 5YQ7

Retrieve 5YQ7 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5YQ7 from S2C, [Save to disk]

View 5YQ7 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yq7_0] [5yq7_1] [5yq7_2] [5yq7_3] [5yq7_4] [5yq7_5] [5yq7_6] [5yq7_7] [5yq7_8] [5yq7_9] [5yq7_A] [5yq7_B] [5yq7_C] [5yq7_D] [5yq7_E] [5yq7_F] [5yq7_G] [5yq7_H] [5yq7_I] [5yq7_J] [5yq7_K] [5yq7_L] [5yq7_M] [5yq7_N] [5yq7_O] [5yq7_P] [5yq7_Q] [5yq7_R] [5yq7_S] [5yq7_T] [5yq7_U] [5yq7_V] [5yq7_W] [5yq7_X] [5yq7_Y]

SWISS-PROT database:

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