5G4W Isomerase date May 17, 2016
title S. Enterica Hisa Mutant D7n, D10g, Dup13-15 (Vvr) With Subst Profar
authors X.Guo, A.Soderholm, M.Newton, J.Nasvall, F.Duarte, D.Andersson, W. M.Selmer
compound source
Molecule: Hisa
Chain: A
Ec: 5.3.1.16
Engineered: Yes
Mutation: Yes
 Organism_scientific: Salmonella Enterica
Organism_taxid: 28901
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pexp5-Ct
symmetry Space Group: P 61 2 2
R_factor 0.199 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.012 87.012 120.457 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL, GUO enzyme Isomerase E.C.5.3.1.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional innovations in the real-time evolution of new (betaalpha)8 barrel enzymes., Newton MS, Guo X, Soderholm A, Nasvall J, Lundstrom P, Andersson DI, Selmer M, Patrick WM, Proc Natl Acad Sci U S A. 2017 Apr 17. pii: 201618552. doi:, 10.1073/pnas.1618552114. PMID:28416687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (5g4w.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 5G4W
  • CSU: Contacts of Structural Units for 5G4W
  • Structure Factors (177 Kb)
  • Retrieve 5G4W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G4W from S2C, [Save to disk]
  • Re-refined 5g4w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5G4W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5G4W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g4w_A] [5g4w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5G4W
  • Community annotation for 5G4W at PDBWiki (http://pdbwiki.org)

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