6CU0 Cytokine date Mar 23, 2018
title Crystal Structure Of 4-1bbl4-1bb (C121s) Complex In P21 Spa
authors B.Aruna, D.M.Zajonc, T.Doukov
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 9
Chain: A, B, C, D, E, F
Synonym: 4-1bb Ligand,4-1bbl
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfsf9
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: G, H, J, K, L, I
Fragment: Residues 23-160
Synonym: 4-1bb Ligand Receptor,Cdw137,T-Cell Antigen 4-1bb Cell Antigen Ila;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf9, Cd137, Ila
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
symmetry Space Group: P 1 21 1
R_factor 0.247 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.961 114.745 126.039 90.00 101.24 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D


J, K, H, I, G, L


Primary referenceCrystal structures of the human 4-1BB receptor bound to its ligand 4-1BBL reveal covalent receptor dimerization as a potential signaling amplifier., Bitra A, Doukov T, Croft M, Zajonc DM, J Biol Chem. 2018 May 2. pii: RA118.003176. doi: 10.1074/jbc.RA118.003176. PMID:29720398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (499 Kb) [Save to disk]
  • Biological Unit Coordinates (6cu0.pdb1.gz) 250 Kb
  • Biological Unit Coordinates (6cu0.pdb2.gz) 244 Kb
  • CSU: Contacts of Structural Units for 6CU0
  • Structure Factors (752 Kb)
  • Retrieve 6CU0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CU0 from S2C, [Save to disk]
  • View 6CU0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CU0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cu0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cu0_E] [6cu0_I] [6cu0_H] [6cu0_F] [6cu0_J] [6cu0_C] [6cu0_K] [6cu0_D] [6cu0_A] [6cu0_L] [6cu0_G] [6cu0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CU0
  • Community annotation for 6CU0 at PDBWiki (http://pdbwiki.org)

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