6L8H Oxidoreductase date Nov 06, 2019
title Crystal Structure Of Cyp97c1
authors G.Niu, Q.Guo, L.Liu
compound source
Molecule: Carotene Epsilon-Monooxygenase, Chloroplastic
Chain: A, B, C, D
Synonym: Cytochrome P450 97c1,Protein Lutein Deficient 1
Ec: 1.14.14.158
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Cyp97c1, Lut1, At3g53130, T4d2.60
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.172 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.749 127.322 143.671 90.00 92.22 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, HEM, SOG enzyme Oxidoreductase E.C.1.14.14.158 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for plant lutein biosynthesis from alpha-carotene., Niu G, Guo Q, Wang J, Zhao S, He Y, Liu L, Proc Natl Acad Sci U S A. 2020 Jun 23;117(25):14150-14157. doi:, 10.1073/pnas.2001806117. Epub 2020 Jun 8. PMID:32513704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]
  • Biological Unit Coordinates (6l8h.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (6l8h.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (6l8h.pdb3.gz) 87 Kb
  • Biological Unit Coordinates (6l8h.pdb4.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 6L8H
  • CSU: Contacts of Structural Units for 6L8H
  • Structure Factors (1954 Kb)
  • Retrieve 6L8H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6L8H from S2C, [Save to disk]
  • View 6L8H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6L8H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6l8h_A] [6l8h_B] [6l8h_C] [6l8h_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6L8H
  • Community annotation for 6L8H at PDBWiki (http://pdbwiki.org)

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