OCA Atlas for 6PV8

6PV8

Membrane Protein

date

Jul 19, 2019

title

Human Alpha3beta4 Nicotinic Acetylcholine Receptor In Comple 1001

authors

A.Gharpure, J.Teng, Y.Zhuang, C.M.Noviello, R.M.Walsh, R.Cabuco, R.J.Howard, N.T.Zaveri, E.Lindahl, R.E.Hibbs

compound

source

Molecule: Fusion Protein Of Neuronal Acetylcholine Receptor Alpha-3 And Soluble Cytochrome B562;
Chain: A, D
Engineered: Yes

Organism_scientific: Homo Sapiens, Escherichia Coli O11
Organism_common: Human
Organism_taxid: 9606, 1095705
Gene: Chrna3, Nachra3, Cwj32_12820
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_variant: Gnti-
Expression_system_cell_line: Hek293
Expression_system_atcc_number: Crl-3022
Expression_system_plasmid: Pezt-Bm

Molecule: Fusion Protein Of Neuronal Acetylcholine Receptor Beta-4 And Soluble Cytochrome B562;
Chain: B, C, E
Engineered: Yes

Organism_scientific: Homo Sapiens, Escherichia Coli O11
Organism_common: Human
Organism_taxid: 9606, 1095705
Gene: Chrnb4, Cwj32_12820
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_variant: Gnti-
Expression_system_atcc_number: Crl-3022
Expression_system_plasmid: Pezt-Bm

Molecule: Igg2b Fab Heavy Chain
Chain: F, H

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc

Molecule: Kappa Fab Light Chain
Chain: G, I

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

3.87 Å

ligand

BMA, MAN, NA, NAG, P1M, Y01

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D
C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (372 Kb) [Save to disk]

Biological Unit Coordinates (6pv8.pdb1.gz) 356 Kb

LPC: Ligand-Protein Contacts for 6PV8

CSU: Contacts of Structural Units for 6PV8

Retrieve 6PV8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6PV8 from S2C, [Save to disk]

View 6PV8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6PV8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6pv8_F] [6pv8_E] [6pv8_I] [6pv8_A] [6pv8_B] [6pv8_H] [6pv8_G] [6pv8_D] [6pv8_C]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6PV8

Community annotation for 6PV8 at PDBWiki (http://pdbwiki.org)

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