6RVD Membrane Protein date May 31, 2019
title Revised Cryo-Em Structure Of The Human 2:1 Ptch1-Shh Complex
authors K.El Omari, A.F.Rudolf, C.Kowatsch, T.Malinauskas, M.Kinnebrew, T.B.Ansell, B.Bishop, E.Pardon, R.A.Schwab, M.Qian, R.Duman, D.F. J.Steyaert, A.Wagner, M.S.P.Sansom, R.Rohatgi, C.Siebold
compound source
Molecule: Protein Patched Homolog 1
Chain: A, B
Synonym: Ptc1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptch1, Ptch
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Sonic Hedgehog Protein
Chain: C
Synonym: Shh,Hhg-1,Shh Unprocessed N-Terminal Signaling And Terminal Autoprocessing Domains,Shhnc;
Engineered: Yes
Other_details: Human Shh N-Terminal Signalling Domain, N-Te Palmitoylated And C-Terminally Cholesterolylated.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shh
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand CA, CLR, NAG, PLM, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (316 Kb) [Save to disk]
  • Biological Unit Coordinates (6rvd.pdb1.gz) 306 Kb
  • LPC: Ligand-Protein Contacts for 6RVD
  • CSU: Contacts of Structural Units for 6RVD
  • Retrieve 6RVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RVD from S2C, [Save to disk]
    • View 6RVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RVD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rvd_A] [6rvd_C] [6rvd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RVD
  • Community annotation for 6RVD at PDBWiki (http://pdbwiki.org)

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