6T90 | Transcription | date | Oct 25, 2019 |
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title | Oct4-Sox2-Bound Nucleosome - Shl-6 | ||||||||||||||||||||||||||
authors | A.K.Michael, G.Kempf, S.Cavadini, R.D.Bunker, N.H.Thoma | ||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||
Molecule: Histone H3.1 Chain: A Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h3a, H3fa, Hist1h3b, H3fl, Hist1h3c, H3fc, Hist1 H3fb, Hist1h3e, H3fd, Hist1h3f, H3fi, Hist1h3g, H3fh, Hist1 H3fk, Hist1h3i, H3ff, Hist1h3j, H3fj; Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 | ||||||||||||||||||||||||||
Molecule: Histone H4 Chain: B, F Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4; Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 | ||||||||||||||||||||||||||
Molecule: Histone H2a Type 1-Be Chain: C, G Synonym: Histone H2a.2,Histone H2aa,Histone H2am Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2ab, H2afm, Hist1h2ae, H2afa Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 | ||||||||||||||||||||||||||
Molecule: Histone H2b Type 1-J Chain: D, H Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj, H2bfr Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 | ||||||||||||||||||||||||||
Molecule: Histone H3.1 Chain: E Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: H3c1, H3fa, Hist1h3a, H3c2, H3fl, Hist1h3b, H3c3, H3f Hist1h3c, H3c4, H3fb, Hist1h3d, H3c6, H3fd, Hist1h3e, H3c7, Hist1h3f, H3c8, H3fh, Hist1h3g, H3c10, H3fk, Hist1h3h, H3c1 Hist1h3i, H3c12, H3fj, Hist1h3j; Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 | ||||||||||||||||||||||||||
Molecule: Dna (146-Mer) Chain: I Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||
Molecule: Dna (146-Mer) Chain: J Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||
Molecule: Green Fluorescent Protein,Pou Domain, Class 5, Transcription Factor 1; Chain: K Synonym: Octamer-Binding Protein 3,Oct-3,Octamer-Binding Pr Oct-4,Octamer-Binding Transcription Factor 3,Otf-3; Engineered: Yes |
Organism_scientific: Aequorea Victoria, Homo Sapiens Organism_common: Jellyfish, Human Organism_taxid: 6100, 9606 Gene: Gfp, Pou5f1, Oct3, Oct4, Otf3 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||
Molecule: Transcription Factor Sox-2 Chain: L Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sox2 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 3.05 Å | ||||||||||||||||||||||||
ligand | PTD | enzyme |
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Gene Ontology |
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Primary reference | Mechanisms of OCT4-SOX2 motif readout on nucleosomes., Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schubeler D, Thoma NH, Science. 2020 Apr 23. pii: science.abb0074. doi: 10.1126/science.abb0074. PMID:32327602 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |