6WMT Transcription date Apr 21, 2020
title F. Tularensis Rnaps70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Comple
authors B.A.Travis, R.G.Brennan, M.A.Schumacher
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
 Organism_scientific: Francisella Tularensis Subsp. Holarcti (Strain Lvs);
Organism_taxid: 376619
Strain: Lvs

Molecule: Dna-Directed Rna Polymerase Subunit Alpha 1
Chain: A
Synonym: Rnap Subunit Alpha 1,Rna Polymerase Subunit Alpha Transcriptase Subunit Alpha 1;
Ec: 2.7.7.6
Organism_scientific: Francisella Tularensis Subsp. Holarcti (Strain Lvs);
Organism_taxid: 376619
Strain: Lvs

Molecule: Dna-Directed Rna Polymerase Subunit Alpha 2
Chain: B
Synonym: Rnap Subunit Alpha 2,Rna Polymerase Subunit Alpha Transcriptase Subunit Alpha 2;
Ec: 2.7.7.6
Organism_scientific: Francisella Tularensis Subsp. Holarcti (Strain Lvs);
Organism_taxid: 376619
Strain: Lvs

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Organism_scientific: Francisella Tularensis Subsp. Holarcti (Strain Lvs);
Organism_taxid: 376619
Strain: Lvs

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Ec: 2.7.7.6
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619
Strain: Lvs

Molecule: Dna Nt-Strand
Chain: G
Engineered: Yes
Synthetic: Yes
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619

Molecule: Dna T-Strand
Chain: H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619

Molecule: Dna T-Strand Downstream
Chain: J
Engineered: Yes
Synthetic: Yes
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619

Molecule: Actds
Chain: K, L
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619

Molecule: Macrophage Growth Locus, Subunit A
Chain: M
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619

Molecule: Glutathione S-Transferase
Chain: S
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619

Molecule: Dna Nt-Strand Downstream
Chain: X
Engineered: Yes
Synthetic: Yes
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619

Molecule: Rna Polymerase Sigma Factor Rpod
Chain: Z
Synonym: Sigma-70
Organism_scientific: Francisella Tularensis Subsp. Holarcti
Organism_taxid: 376619
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.43 Å
ligand G4P, MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (585 Kb) [Save to disk]
  • Biological Unit Coordinates (6wmt.pdb1.gz) 575 Kb
  • LPC: Ligand-Protein Contacts for 6WMT
  • CSU: Contacts of Structural Units for 6WMT
  • Retrieve 6WMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WMT from S2C, [Save to disk]
    • View 6WMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WMT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wmt_M] [6wmt_J] [6wmt_X] [6wmt_Z] [6wmt_S] [6wmt_E] [6wmt_H] [6wmt_C] [6wmt_K] [6wmt_D] [6wmt_G] [6wmt_B] [6wmt_A] [6wmt_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WMT
  • Community annotation for 6WMT at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science