8DNY	Protein Transport Inhibitor	date	Jul 12, 2022
title	Cryo-Em Structure Of The Human Sec61 Complex Inhibited By De
authors	E.Park, S.Itskanov
compound		source
Molecule: Protein Transport Protein Sec61 Subunit Alpha Iso Chain: A Synonym: Sec61 Alpha-1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sec61a1, Sec61a Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Protein Transport Protein Sec61 Subunit Gamma Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sec61g Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Protein Transport Protein Sec61 Subunit Beta Chain: C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sec61b Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Decatransin Peptide Inhibitor Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	2.85 Å
ligand	HLX, IML, NZC, T2X, T3R, YCP	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (8dny.pdb1.gz) 80 Kb LPC: Ligand-Protein Contacts for 8DNY CSU: Contacts of Structural Units for 8DNY Retrieve 8DNY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 8DNY from S2C, [Save to disk]

View 8DNY in 3D

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Visual 3D analysis of 8DNY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [8dny_A] [8dny_C] [8dny_D] [8dny_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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