2FOL Protein Transport date Jan 13, 2006
title Crystal Structure Of Human Rab1a In Complex With Gdp
authors J.Wang, W.Tempel, Y.Shen, L.Shen, C.Arrowsmith, A.Edwards, M.Sunds J.Weigelt, A.Bochkarev, H.Park, Structural Genomics Consortium
compound source
Molecule: Ras-Related Protein Rab-1a
Chain: A
Synonym: Ypt1-Related Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab1a, Rab1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus (De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Lic
symmetry Space Group: P 32 2 1
R_factor 0.199 R_Free 0.252
length a length b length c angle alpha angle beta angle gamma
75.790 75.790 49.080 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.63 Å
ligand GDP, MG, UNX enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (2fol.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 2FOL
  • CSU: Contacts of Structural Units for 2FOL
  • Likely Quarternary Molecular Structure file(s) for 2FOL
  • Structure Factors (36 Kb)
  • Retrieve 2FOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FOL from S2C, [Save to disk]
  • Re-refined 2fol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FOL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FOL, from MSDmotif at EBI
  • Fold representative 2fol from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fol_A] [2fol]
  • SWISS-PROT database: [P62820]
  • Domain organization of [RAB1A_HUMAN] by SWISSPFAM
  • Domain found in 2FOL: [RAB ] by SMART
  • Other resources with information on 2FOL
  • Community annotation for 2FOL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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