5DVX Lyase date Sep 21, 2015
title Crystal Structure Of The Catalytic-Domain Of Human Carbonic Ix At 1.6 Angstrom Resolution
authors B.P.Mahon, L.Socorro, J.M.Driscoll, R.Mckenna
compound source
Molecule: Carbonic Anhydrase 9
Chain: A, B
Fragment: Catalytic-Domain (Unp Residues 140-399)
Synonym: Carbonate Dehydratase Ix,Carbonic Anhydrase Ix,Cai Antigen Mn,P5458n,Renal Cell Carcinoma-Associated Antigen Associated Antigen G250,Pmw1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca9, G250, Mn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.168 R_Free 0.191
length a length b length c angle alpha angle beta angle gamma
57.877 102.744 108.964 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CL, GOL, TRS, ZN enzyme Lyase E.C. BRENDA
A, B

Primary referenceStructure of carbonic anhydrase IX is adapted for low pH catalysis., Mahon BP, Bhatt A, Socorro L, Driscoll JM, Okoh C, Lomelino CL, Mboge MY, Kurian JJ, Tu C, Agbandje-McKenna M, Frost SC, McKenna R, Biochemistry. 2016 Jul 20. PMID:27439028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (5dvx.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (5dvx.pdb2.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 5DVX
  • CSU: Contacts of Structural Units for 5DVX
  • Structure Factors (1951 Kb)
  • Retrieve 5DVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DVX from S2C, [Save to disk]
  • Re-refined 5dvx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DVX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DVX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5dvx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dvx_A] [5dvx_B] [5dvx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DVX: [Carb_anhydrase ] by SMART
  • Other resources with information on 5DVX
  • Community annotation for 5DVX at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science