OCA Atlas for 1DX5

1DX5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

0GJ, CA, FMT, NA, NAG

enzyme

related structures

by homologous chain: 1BTH, 1SGI

Gene
Ontology

Chain	Function	Process	Component
B, A, D, C
I, K, J, L
O, N, M, P

Primary reference

Structural basis for the anticoagulant activity of the thrombin-thrombomodulin complex., Fuentes-Prior P, Iwanaga Y, Huber R, Pagila R, Rumennik G, Seto M, Morser J, Light DR, Bode W, Nature 2000 Mar 30;404(6777):518-25. PMID:10761923

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]

Biological Unit Coordinates (1dx5.pdb1.gz) 75 Kb

Biological Unit Coordinates (1dx5.pdb2.gz) 75 Kb

Biological Unit Coordinates (1dx5.pdb3.gz) 74 Kb

Biological Unit Coordinates (1dx5.pdb4.gz) 74 Kb

LPC: Ligand-Protein Contacts for 1DX5

CSU: Contacts of Structural Units for 1DX5

Likely Quarternary Molecular Structure file(s) for 1DX5

Retrieve 1DX5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1DX5 from S2C, [Save to disk]

View 1DX5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dx5] [1dx5_A] [1dx5_B] [1dx5_C] [1dx5_D] [1dx5_E] [1dx5_F] [1dx5_G] [1dx5_H] [1dx5_I] [1dx5_J] [1dx5_K] [1dx5_L] [1dx5_M] [1dx5_N] [1dx5_O] [1dx5_P]

SWISS-PROT database: [P00734] [P07204]

Domains found in 1DX5: [EGF] [EGF_like] [Tryp_SPc ] by SMART

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