1GMO	Hormone	date	Sep 20, 2001
title	Crystal Structures Of Nk1-Heparin Complexes Reveal The Basis Activity And Enable Engineering Of Potent Agonists Of The M Receptor
authors	D.Lietha, D.Y.Chirgadze, B.Mulloy, T.L.Blundell, E.Gherardi
compound		source
Molecule: Hepatocyte Growth Factor Chain: A, B, C, D, E, F, G, H Fragment: Nk1 Synonym: Scatter Factor, Sf, Hepatopoeitin A, Hgf Engineered: Yes Mutation: Yes Other_details: Nk1 Dimer In Complex With Heparin Molecule		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Pichia Pastoris Expression_system_taxid: 644223 Expression_system_strain: Gs115 Expression_system_vector: Yeast Expression_system_plasmid: Ppic-9k
symmetry	Space Group: P 21 21 2	R_factor 0.254 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 179.700 174.100 59.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	EPE, IDS, SGN, SO4	enzyme
related structures	by homologous chain: 1NK1, 2HGF
Primary reference	Crystal structures of NK1-heparin complexes reveal the basis for NK1 activity and enable engineering of potent agonists of the MET receptor., Lietha D, Chirgadze DY, Mulloy B, Blundell TL, Gherardi E, EMBO J 2001 Oct 15;20(20):5543-55. PMID:11597998

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk] Biological Unit Coordinates (1gmo.pdb1.gz) 65 Kb Biological Unit Coordinates (1gmo.pdb2.gz) 60 Kb Biological Unit Coordinates (1gmo.pdb3.gz) 59 Kb Biological Unit Coordinates (1gmo.pdb4.gz) 57 Kb LPC: Ligand-Protein Contacts for 1GMO CSU: Contacts of Structural Units for 1GMO Likely Quarternary Molecular Structure file(s) for 1GMO Structure Factors (278 Kb) Retrieve 1GMO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GMO from S2C, [Save to disk] Re-refined 1gmo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GMO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GMO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GMO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gmoa2, region A:126-208 [Jmol] [rasmolscript] [script source]     - Domain d1gmoa1, region A:37-125 [Jmol] [rasmolscript] [script source]     - Domain d1gmob2, region B:126-208 [Jmol] [rasmolscript] [script source]     - Domain d1gmob1, region B:37-125 [Jmol] [rasmolscript] [script source]     - Domain d1gmoc2, region C:126-208 [Jmol] [rasmolscript] [script source]     - Domain d1gmoc1, region C:37-125 [Jmol] [rasmolscript] [script source]     - Domain d1gmod2, region D:126-208 [Jmol] [rasmolscript] [script source]     - Domain d1gmod1, region D:37-125 [Jmol] [rasmolscript] [script source]     - Domain d1gmoe2, region E:126-209 [Jmol] [rasmolscript] [script source]     - Domain d1gmoe1, region E:37-125 [Jmol] [rasmolscript] [script source]     - Domain d1gmof2, region F:126-209 [Jmol] [rasmolscript] [script source]     - Domain d1gmof1, region F:37-125 [Jmol] [rasmolscript] [script source]     - Domain d1gmog2, region G:126-208 [Jmol] [rasmolscript] [script source]     - Domain d1gmog1, region G:38-125 [Jmol] [rasmolscript] [script source]     - Domain d1gmoh2, region H:126-208 [Jmol] [rasmolscript] [script source]     - Domain d1gmoh1, region H:38-125 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gmo_H] [1gmo_G] [1gmo_C] [1gmo_B] [1gmo_D] [1gmo_A] [1gmo_E] [1gmo] [1gmo_F] SWISS-PROT database: [P14210] Domain organization of [HGF_HUMAN] by SWISSPFAM Domains found in 1GMO: [KR] [PAN_AP ] by SMART

Other resources with information on 1GMO

Community annotation for 1GMO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---