1NH1 Avirulence Protein date Dec 18, 2002
title Crystal Structure Of The Type III Effector Avrb From Pseudomonas Syringae.
authors C.C.Lee, M.D.Wood, K.Ng, P.Luginbuhl, G.Spraggon, F.Katagiri
compound source
Molecule: Avirulence B Protein
Chain: A
Engineered: Yes
Organism_scientific: Pseudomonas Syringae
Organism_taxid: 317
Gene: Avrb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21 (De3) Plyss
Expression_system_vector: Plasmid
Expression_system_plasmid: Pet-27b(+)
symmetry Space Group: P 65
R_factor 0.222 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.028 125.028 63.246 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of the Type III Effector AvrB from Pseudomonas syringae., Lee CC, Wood MD, Ng K, Andersen CB, Liu Y, Luginbuhl P, Spraggon G, Katagiri F, Structure (Camb) 2004 Mar;12(3):487-94. PMID:15016364
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1nh1.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 1NH1
  • Likely Quarternary Molecular Structure file(s) for 1NH1
  • Retrieve 1NH1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NH1 from S2C, [Save to disk]
  • View 1NH1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NH1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NH1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nh1a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1nh1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nh1_A] [1nh1]
  • SWISS-PROT database: [P13835]
  • Domain organization of [AVRB_PSESG] by SWISSPFAM
  • Other resources with information on 1NH1
  • Community annotation for 1NH1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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