1RJO	Oxidoreductase	date	Nov 19, 2003
title	Agao + Xe
authors	J.M.Guss, D.M.Trambaiolo, A.P.Duff
compound		source
Molecule: Phenylethylamine Oxidase Chain: A Synonym: Amine Oxidase, Copper Amine Oxidase, Agao Ec: 1.4.3.6 Engineered: Yes		Organism_scientific: Arthrobacter Globiformis Organism_taxid: 1665 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pagao2
symmetry	Space Group: C 1 2 1	R_factor 0.157 R_Free 0.178
crystal cell	length a length b length c angle alpha angle beta angle gamma 158.009 63.189 92.149 90.00 112.09 90.00
method	X-Ray Diffraction	resolution	1.67 Å
ligand	CU, GOL, NA, SO4, TPQ, XE	enzyme	Oxidoreductase E.C.1.4.3.6 BRENDA
related structures	by homologous chain: 1SII
Gene Ontology	Chain Function Process Component A
Primary reference	Using xenon as a probe for dioxygen-binding sites in copper amine oxidases., Duff AP, Trambaiolo DM, Cohen AE, Ellis PJ, Juda GA, Shepard EM, Langley DB, Dooley DM, Freeman HC, Guss JM, J Mol Biol 2004 Nov 26;344(3):599-607. PMID:15533431

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (1rjo.pdb1.gz) 214 Kb LPC: Ligand-Protein Contacts for 1RJO CSU: Contacts of Structural Units for 1RJO Likely Quarternary Molecular Structure file(s) for 1RJO Structure Factors (1161 Kb) Retrieve 1RJO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RJO from S2C, [Save to disk] Re-refined 1rjo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RJO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RJO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RJO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rjoa1, region A:212-628 [Jmol] [rasmolscript] [script source]     - Domain d1rjoa2, region A:9-96 [Jmol] [rasmolscript] [script source]     - Domain d1rjoa3, region A:97-211 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rjo_A] [1rjo] SWISS-PROT database: [P46881] Domain organization of [PAOX_ARTGO] by SWISSPFAM

Other resources with information on 1RJO

Community annotation for 1RJO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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