2FMP	Transferase Dna	date	Jan 09, 2006
title	Dna Polymerase Beta With A Terminated Gapped Dna Substrate A With Sodium In The Catalytic Site
authors	V.K.Batra, W.A.Beard, D.D.Shock, J.M.Krahn, L.C.Pedersen, S.H.Wil
compound		source
Molecule: 5'-D(Cpcpgpapcpgpgpcpgpcpaptpcpapg Chain: T Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Gpcptpgpaptpgpcpgp(Doc))-3' Chain: P Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Pgptpcpgpg)-3' Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Dna Polymerase Beta Chain: A Ec: 2.7.7.7, 4.2.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.179 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.900 80.400 55.300 90.00 107.50 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	DCT, DOC, MG, NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Magnesium-induced assembly of a complete DNA polymerase catalytic complex., Batra VK, Beard WA, Shock DD, Krahn JM, Pedersen LC, Wilson SH, Structure. 2006 Apr;14(4):757-66. PMID:16615916

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk] Biological Unit Coordinates (2fmp.pdb1.gz) 81 Kb LPC: Ligand-Protein Contacts for 2FMP CSU: Contacts of Structural Units for 2FMP Likely Quarternary Molecular Structure file(s) for 2FMP Structure Factors (450 Kb) Retrieve 2FMP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FMP from S2C, [Save to disk] Re-refined 2fmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FMP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FMP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FMP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fmp] [2fmp_A] [2fmp_T] [2fmp_D] [2fmp_P] SWISS-PROT database: [P06746] Domain organization of [DPOLB_HUMAN] by SWISSPFAM Domains found in 2FMP: [HhH1] [POLXc ] by SMART

Other resources with information on 2FMP

Community annotation for 2FMP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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