2GER Oxidoreductase date Mar 20, 2006
title Crystal Structure And Oxidative Mechanism Of Human Pyrroline Carboxylate Reductase
authors Z.Meng, Z.Lou, Z.Liu, Z.Rao
compound source
Molecule: Pyrroline-5-Carboxylate Reductase 1
Chain: A, B, C, D, E
Synonym: P5cr 1, P5c Reductase 1
Ec: 1.5.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.233 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
207.607 123.805 120.790 90.00 121.76 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand
enzyme Oxidoreductase E.C.1.5.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceCrystal structure of human pyrroline-5-carboxylate reductase., Meng Z, Lou Z, Liu Z, Li M, Zhao X, Bartlam M, Rao Z, J Mol Biol. 2006 Jun 23;359(5):1364-77. Epub 2006 May 11. PMID:16730026
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (2ger.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2ger.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (2ger.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (2ger.pdb4.gz) 46 Kb
  • Biological Unit Coordinates (2ger.pdb5.gz) 47 Kb
  • Biological Unit Coordinates (2ger.pdb6.gz) 90 Kb
  • Biological Unit Coordinates (2ger.pdb7.gz) 90 Kb
  • CSU: Contacts of Structural Units for 2GER
  • Likely Quarternary Molecular Structure file(s) for 2GER
  • Structure Factors (674 Kb)
  • Retrieve 2GER in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GER from S2C, [Save to disk]
  • Re-refined 2ger structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GER in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GER
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GER, from MSDmotif at EBI
  • Fold representative 2ger from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ger_A] [2ger_E] [2ger] [2ger_C] [2ger_D] [2ger_B]
  • SWISS-PROT database: [P32322]
  • Domain organization of [P5CR1_HUMAN] by SWISSPFAM
  • Other resources with information on 2GER
  • Community annotation for 2GER at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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