2LP8 Apoptosis Apoptosis Activator date Feb 03, 2012
title Solution Structure Of An Apoptosis Activating Photoswitchabl Peptide Bound To Bcl-Xl
authors P.Wysoczanski, R.J.Mart, J.E.Loveridge, C.Williams, S.B.M.Whitt M.P.Crump, R.K.Allemann
compound source
Molecule: Bcl-2-Like Protein 1
Chain: A
Synonym: Bcl2-L-1, Apoptosis Regulator Bcl-X
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2l, Bcl2l1, Bclx
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet19b

Molecule: Bcl-2 Homologous Antagonistkiller
Chain: B
Fragment: Bh3 Domain Residues 72-87
Synonym: Apoptosis Regulator Bak, Bcl-2-Like Protein 7, Bcl
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand 33B, ACE, NH2 enzyme

Primary referenceNMR Solution Structure of a Photoswitchable Apoptosis Activating Bak Peptide Bound to Bcl-x(L)., Wysoczanski P, Mart RJ, Loveridge EJ, Williams C, Whittaker SB, Crump MP, Allemann RK, J Am Chem Soc. 2012 Apr 25. PMID:22515821
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1267 Kb) [Save to disk]
  • Biological Unit Coordinates (2lp8.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 2LP8
  • CSU: Contacts of Structural Units for 2LP8
  • Original NMR restraints for 2LP8 from PDB
  • Retrieve 2LP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LP8 from S2C, [Save to disk]
  • View 2LP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LP8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LP8, from MSDmotif at EBI
  • Fold representative 2lp8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lp8_A] [2lp8] [2lp8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2LP8: [BCL] [BH4 ] by SMART
  • Other resources with information on 2LP8
  • Community annotation for 2LP8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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