2YPT	Hydrolase Peptide	date	Nov 01, 2012
title	Crystal Structure Of The Human Nuclear Membrane Zinc Metallo Zmpste24 Mutant (E336a) In Complex With A Synthetic Csim Te From The C-Terminus Of Prelamin A
authors	A.C.W.Pike, Y.Y.Dong, A.Quigley, L.Dong, P.Savitsky, C.D.O.Cooper A.Chaikuad, S.Goubin, L.Shrestha, Q.Li, S.Mukhopadhyay, J.Yang, X C.A.Shintre, A.J.Barr, G.Berridge, R.Chalk, J.E.Bray, F.Von Delf A.Bullock, C.Bountra, C.H.Arrowsmith, A.Edwards, N.Burgess-Brow E.P.Carpenter
compound		source
Molecule: Caax Prenyl Protease 1 Homolog Chain: A, B, D, E Synonym: Farnesylated Proteins-Converting Enzyme 1, Face-1, Protein-Specific Endoprotease 1, Zinc Metalloproteinase Ste Homolog; Ec: 3.4.24.84 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfb-Ct10hf-Lic
Molecule: Prelamin-Ac Chain: F, G, H, I Fragment: C-Terminal Tetrapeptide, Residues 661-664 Synonym: 70 Kda Lamin, Renal Carcinoma Antigen Ny-Ren-32, P Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.263 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.320 95.540 132.030 76.26 79.67 72.30
method	X-Ray Diffraction	resolution	3.80 Å
ligand	ZN	enzyme	Hydrolase E.C.3.4.24.84 BRENDA
Gene Ontology	Chain Function Process Component A, D, E, B
Primary reference	The structural basis of ZMPSTE24-dependent laminopathies., Quigley A, Dong YY, Pike AC, Dong L, Shrestha L, Berridge G, Stansfeld PJ, Sansom MS, Edwards AM, Bountra C, von Delft F, Bullock AN, Burgess-Brown NA, Carpenter EP, Science. 2013 Mar 29;339(6127):1604-7. doi: 10.1126/science.1231513. PMID:23539603

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (557 Kb) [Save to disk] Biological Unit Coordinates (2ypt.pdb1.gz) 143 Kb Biological Unit Coordinates (2ypt.pdb2.gz) 142 Kb Biological Unit Coordinates (2ypt.pdb3.gz) 138 Kb Biological Unit Coordinates (2ypt.pdb4.gz) 137 Kb LPC: Ligand-Protein Contacts for 2YPT CSU: Contacts of Structural Units for 2YPT Structure Factors (989 Kb) Retrieve 2YPT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YPT from S2C, [Save to disk] Re-refined 2ypt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2YPT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YPT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ypt] [2ypt_E] [2ypt_D] [2ypt_I] [2ypt_A] [2ypt_F] [2ypt_G] [2ypt_H] [2ypt_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 2YPT at PDBWiki (http://pdbwiki.org)

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