3ABM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CDL, CHD, CU, CUA, DMU, FME, HEA, MG, NA, PEK, PER, PGV, PSC, TGL, TPO, UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, N


B, O
  • cytochrome-c oxidase activit...


    • D, Q


    F, S


    G, T


    I, V
  • cytochrome-c oxidase activit...


    • J, W


    M, Z


    P, C
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • R, E


    U, H


    X, K


    Y, L


    Primary referenceA peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump., Aoyama H, Muramoto K, Shinzawa-Itoh K, Hirata K, Yamashita E, Tsukihara T, Ogura T, Yoshikawa S, Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2165-9. Epub 2009 Jan 21. PMID:19164527
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (663 Kb) [Save to disk]
  • Biological Unit Coordinates (3abm.pdb1.gz) 327 Kb
  • Biological Unit Coordinates (3abm.pdb2.gz) 324 Kb
  • LPC: Ligand-Protein Contacts for 3ABM
  • CSU: Contacts of Structural Units for 3ABM
  • Structure Factors (3770 Kb)
  • Retrieve 3ABM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ABM from S2C, [Save to disk]
  • Re-refined 3abm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ABM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3abm] [3abm_A] [3abm_B] [3abm_C] [3abm_D] [3abm_E] [3abm_F] [3abm_G] [3abm_H] [3abm_I] [3abm_J] [3abm_K] [3abm_L] [3abm_M] [3abm_N] [3abm_O] [3abm_P] [3abm_Q] [3abm_R] [3abm_S] [3abm_T] [3abm_U] [3abm_V] [3abm_W] [3abm_X] [3abm_Y] [3abm_Z]
  • SWISS-PROT database: [P00396] [P68530] [P00415] [P00423] [P00426] [P00428] [P04038] [P13183] [P00430] [P10175] [P07471] [P00429] [P07470]
  • Belongs to the proton-translocating cytochrome oxidase (cox) superfamily according to TCDB.

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