3BLJ Transferase date Dec 11, 2007
title Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15, C Fragment
authors T.Karlberg, L.Lehtio, C.H.Arrowsmith, H.Berglund, R.D.Busam, R.Co L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham I.Johansson, A.Kallas, T.Kotenyova, M.Moche, M.E.Nilsson, P.Nord T.Nyman, C.Persson, J.Sagemark, L.Svensson, A.G.Thorsell, L.Tres S.Van Den Berg, M.Welin, J.Weigelt, Structural Genomics Consor (Sgc)
compound source
Molecule: Poly(Adp-Ribose) Polymerase 15
Chain: A, B
Fragment: Catalytic Domain: Residues 459-656
Synonym: Parp-15, B-Aggressive Lymphoma Protein 3
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp15, Bal3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.210 68.120 158.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, GOL, NA enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for Lack of ADP-Ribosyltransferase Activity in Poly(ADP-Ribose) Polymerase-13/Zinc Finger Antiviral Protein., Karlberg T, Klepsch M, Thorsell AG, Andersson CD, Linusson A, Schuler H, J Biol Chem. 2015 Jan 29. pii: jbc.M114.630160. PMID:25635049
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (3blj.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (3blj.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 3BLJ
  • CSU: Contacts of Structural Units for 3BLJ
  • Likely Quarternary Molecular Structure file(s) for 3BLJ
  • Structure Factors (201 Kb)
  • Retrieve 3BLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BLJ from S2C, [Save to disk]
  • Re-refined 3blj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BLJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BLJ, from MSDmotif at EBI
  • Fold representative 3blj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3blj_A] [3blj] [3blj_B]
  • SWISS-PROT database: [Q460N3]
  • Domain organization of [PAR15_HUMAN] by SWISSPFAM
  • Other resources with information on 3BLJ
  • Community annotation for 3BLJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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