3EDH Hydrolase date Sep 03, 2008
title Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain In Complex With Partially Bound Dmso
authors A.Mac Sweeney
compound source
Molecule: Bone Morphogenetic Protein 1
Chain: A
Fragment: Protease Domain
Synonym: Bmp-1, Procollagen C-Proteinase, Pcp, Mammalian Tolloid Protein, Mtld;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp1, Pcolc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24a
symmetry Space Group: P 21 21 21
R_factor 0.140 R_Free 0.172
length a length b length c angle alpha angle beta angle gamma
53.499 59.093 69.451 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand ACE, DMS, ZN enzyme Hydrolase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3edh.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3EDH
  • CSU: Contacts of Structural Units for 3EDH
  • Likely Quarternary Molecular Structure file(s) for 3EDH
  • Structure Factors (861 Kb)
  • Retrieve 3EDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EDH from S2C, [Save to disk]
  • Re-refined 3edh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EDH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EDH, from MSDmotif at EBI
  • Fold representative 3edh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3edh] [3edh_A]
  • SWISS-PROT database: [P13497]
  • Domain organization of [BMP1_HUMAN] by SWISSPFAM
  • Domain found in 3EDH: [ZnMc ] by SMART
  • Other resources with information on 3EDH
  • Community annotation for 3EDH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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