3PZD Motor Protein Apoptosis date Dec 14, 2010
title Structure Of The Myosin X Myth4-Fermdcc Complex
authors Z.Wei, J.Yan, L.Pan, M.Zhang
compound source
Molecule: Myosin-X
Chain: A
Fragment: Myth4-Ferm Tandem
Synonym: Unconventional Myosin-10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0799, Myo10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Netrin Receptor Dcc
Chain: B
Fragment: P3 Motif
Synonym: Tumor Suppressor Protein Dcc
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Dcc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.167 49.528 92.814 90.00 112.58 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCargo recognition mechanism of myosin X revealed by the structure of its tail MyTH4-FERM tandem in complex with the DCC P3 domain., Wei Z, Yan J, Lu Q, Pan L, Zhang M, Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3572-7. Epub 2011 Feb 14. PMID:21321230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (3pzd.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 3PZD
  • CSU: Contacts of Structural Units for 3PZD
  • Structure Factors (1222 Kb)
  • Retrieve 3PZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PZD from S2C, [Save to disk]
  • Re-refined 3pzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PZD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PZD, from MSDmotif at EBI
  • Fold representative 3pzd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pzd_B] [3pzd_A] [3pzd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3PZD: [B41] [MyTH4 ] by SMART
  • Other resources with information on 3PZD
  • Community annotation for 3PZD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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