3RNY Transferase date Apr 24, 2011
title Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
authors D.Li, T.M.Fu, J.Nan, X.D.Su
compound source
Molecule: Ribosomal Protein S6 Kinase Alpha-1
Chain: A, B
Fragment: Unp Residues 411-735
Synonym: S6k-Alpha-1, 90 Kda Ribosomal Protein S6 Kinase 1, 1, P90rsk1, P90s6k, Map Kinase-Activated Protein Kinase 1a, Activated Protein Kinase 1a, Mapkap Kinase 1a, Mapkapk-1a, S6 Kinase 1, Rsk-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps6ka1, Mapkapk1a, Rsk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
39.860 143.470 59.920 90.00 95.77 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand NA enzyme Transferase E.C. BRENDA
A, B

Primary referenceStructural basis for the autoinhibition of the C-terminal kinase domain of human RSK1., Li D, Fu TM, Nan J, Liu C, Li LF, Su XD, Acta Crystallogr D Biol Crystallogr. 2012 Jun;68(Pt 6):680-5. Epub 2012 May 17. PMID:22683790
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (3rny.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (3rny.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (3rny.pdb3.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 3RNY
  • CSU: Contacts of Structural Units for 3RNY
  • Structure Factors (391 Kb)
  • Retrieve 3RNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RNY from S2C, [Save to disk]
  • Re-refined 3rny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RNY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RNY, from MSDmotif at EBI
  • Fold representative 3rny from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rny_B] [3rny] [3rny_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RNY: [S_TKc ] by SMART
  • Other resources with information on 3RNY
  • Community annotation for 3RNY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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