3VOQ Membrane Protein date Jan 31, 2012
title Crystal Structure Of The Pleckstrin Homology Domain Of Human Torc2 Subunit
authors D.Pan, Y.Matsuura
compound source
Molecule: Target Of Rapamycin Complex 2 Subunit Mapkap1
Chain: A, B
Fragment: C-Terminal Ph Domain, Unp Residues 372-493
Synonym: Torc2 Subunit Mapkap1, Mitogen-Activated Protein K Associated Protein 1, Stress-Activated Map Kinase-Interacti 1, Sapk-Interacting Protein 1, Msin1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sin1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a-Tev
symmetry Space Group: P 43 21 2
R_factor 0.193 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.293 79.293 123.599 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceStructures of the pleckstrin homology domain of Saccharomyces cerevisiae Avo1 and its human orthologue Sin1, an essential subunit of TOR complex 2., Pan D, Matsuura Y, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Apr 1;68(Pt 4):386-92., Epub 2012 Mar 27. PMID:22505404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3voq.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3VOQ
  • Structure Factors (1414 Kb)
  • Retrieve 3VOQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VOQ from S2C, [Save to disk]
  • Re-refined 3voq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VOQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VOQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3VOQ, from MSDmotif at EBI
  • Fold representative 3voq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3voq_A] [3voq] [3voq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VOQ
  • Community annotation for 3VOQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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