4H1V Hydrolase date Sep 11, 2012
title Gmp-Pnp Bound Dynamin-1-Like Protein Gtpase-Ged Fusion
authors J.Wenger, E.Klinglmayr, C.Eibl, M.Hessenberger, P.Goettig
compound source
Molecule: Dynamin-1-Like Protein
Chain: A
Fragment: Gtpase-Ged Fusion (Unp Residues 1-327 And 711-736
Synonym: Dnm1pvps1p-Like Protein, Dvlp, Dynamin Family Mem Proline-Rich Carboxyl-Terminal Domain Less, Dymple, Dynamin Protein, Dynamin-Like Protein 4, Dynamin-Like Protein Iv, H Dynamin-Related Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnm1l, Dlp1, Drp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.227 R_Free 0.278
length a length b length c angle alpha angle beta angle gamma
53.420 151.310 43.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GNP enzyme Hydrolase E.C. BRENDA

Primary referenceFunctional Mapping of Human Dynamin-1-Like GTPase Domain Based on X-ray Structure Analyses., Wenger J, Klinglmayr E, Frohlich C, Eibl C, Gimeno A, Hessenberger M, Puehringer S, Daumke O, Goettig P, PLoS One. 2013 Aug 19;8(8):e71835. doi: 10.1371/journal.pone.0071835. PMID:23977156
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (4h1v.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 4H1V
  • CSU: Contacts of Structural Units for 4H1V
  • Structure Factors (119 Kb)
  • Retrieve 4H1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H1V from S2C, [Save to disk]
  • Re-refined 4h1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H1V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4H1V, from MSDmotif at EBI
  • Fold representative 4h1v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h1v_A] [4h1v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4H1V: [DYNc ] by SMART
  • Other resources with information on 4H1V
  • Community annotation for 4H1V at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science