5CZV	Immune System	date	Aug 01, 2015
title	Crystal Structure Of Notch3 Nrr In Complex With 20350 Fab
authors	T.Hu, C.Fryer, R.Chopra, K.Clark
compound		source
Molecule: Neurogenic Locus Notch Homolog Protein 3 Chain: A Fragment: Negative Regulatory Region (Unp Residues 1378-164 Synonym: Notch 3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Notch3 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293-Fs Expression_system_vector_type: Plasmid
Molecule: Fab 20350 Heavy Chain Chain: H Synonym: Igg20350 Heavy Chain, Nvp-Lmw976 Heavy Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293 Expression_system_vector_type: Plasmid
Molecule: Fab 20350 Light Chain Chain: L Synonym: Igg20350 Light Chain, Nvp-Lmw976 Light Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293 Expression_system_vector_type: Plasmid
symmetry	Space Group: C 1 2 1	R_factor 0.204 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.917 104.349 92.849 90.00 113.17 90.00
method	X-Ray Diffraction	resolution	3.19 Å
ligand	CA, NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Characterization of activating mutations of NOTCH3 in T-cell acute lymphoblastic leukemia and anti-leukemic activity of NOTCH3 inhibitory antibodies., Bernasconi-Elias P, Hu T, Jenkins D, Firestone B, Gans S, Kurth E, Capodieci P, Deplazes-Lauber J, Petropoulos K, Thiel P, Ponsel D, Hee Choi S, LeMotte P, London A, Goetcshkes M, Nolin E, Jones MD, Slocum K, Kluk MJ, Weinstock DM, Christodoulou A, Weinberg O, Jaehrling J, Ettenberg SA, Buckler A, Blacklow SC, Aster JC, Fryer CJ, Oncogene. 2016 May 9. doi: 10.1038/onc.2016.133. PMID:27157619

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk] Biological Unit Coordinates (5czv.pdb1.gz) 208 Kb LPC: Ligand-Protein Contacts for 5CZV CSU: Contacts of Structural Units for 5CZV Structure Factors (205 Kb) Retrieve 5CZV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CZV from S2C, [Save to disk] Re-refined 5czv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CZV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CZV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5czv] [5czv_A] [5czv_L] [5czv_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CZV: [IG_like] [IGv] [NL] [NOD] [NODP ] by SMART

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