5H8N Transport Protein date Dec 23, 2015
title Structure Of The Human Glun1glun2a Lbd In Complex With Nam
authors H.J.A.Wallweber, P.J.Lupardus
compound source
Molecule: Glutamate Receptor Ionotropic, Nmda 2a,Glutamate Ionotropic, Nmda 2a;
Chain: A
Fragment: Unp Residues 401-539, Gt Linker, Unp Residues 661
Synonym: Glun2a, Glutamate [Nmda] Receptor Subunit Epsilon- Methyl D-Aspartate Receptor Subtype 2a, Hnr2a;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grin2a, Nmdar2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glutamate Receptor Ionotropic, Nmda 1,Glutamate R Ionotropic, Nmda 1;
Chain: B
Fragment: Unp Residues 394-544, Gt Linker, Unp Residues 663
Synonym: Glun1, Glutamate [Nmda] Receptor Subunit Zeta-1, N Aspartate Receptor Subunit Nr1, Nmd-R1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grin1, Nmdar1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.236
length a length b length c angle alpha angle beta angle gamma
54.655 89.791 124.695 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 5YD, CA, GLU, GLY enzyme
A, B

Primary referencePositive Allosteric Modulators of GluN2A-Containing NMDARs with Distinct Modes of Action and Impacts on Circuit Function., Hackos DH, Lupardus PJ, Grand T, Chen Y, Wang TM, Reynen P, Gustafson A, Wallweber HJ, Volgraf M, Sellers BD, Schwarz JB, Paoletti P, Sheng M, Zhou Q, Hanson JE, Neuron. 2016 Mar 2;89(5):983-99. doi: 10.1016/j.neuron.2016.01.016. Epub 2016 Feb, 11. PMID:26875626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (5h8n.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 5H8N
  • CSU: Contacts of Structural Units for 5H8N
  • Structure Factors (1512 Kb)
  • Retrieve 5H8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H8N from S2C, [Save to disk]
  • Re-refined 5h8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5H8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H8N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5h8n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h8n] [5h8n_B] [5h8n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5H8N: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
  • Other resources with information on 5H8N
  • Community annotation for 5H8N at PDBWiki (http://pdbwiki.org)

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