5MWF Signaling Protein date Jan 18, 2017
title Human Jagged2 C2-Egf2
authors R.J.Suckling, P.A.Handford, S.M.Lea
compound source
Molecule: Protein Jagged-2
Chain: A, B, C, D, E, F
Synonym: Hj2, Jagged-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jag2
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell: Schneider 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pexs2-2
symmetry Space Group: P 1
R_factor 0.217 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.628 92.929 97.004 71.68 83.16 82.68
method X-Ray Diffractionresolution 2.80 Å
ligand BMA, CA, CL, FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructural and functional dissection of the interplay between lipid and Notch binding by human Notch ligands., Suckling RJ, Korona B, Whiteman P, Chillakuri C, Holt L, Handford PA, Lea SM, EMBO J. 2017 Aug 1;36(15):2204-2215. doi: 10.15252/embj.201796632. Epub 2017 Jun , 1. PMID:28572448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (5mwf.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (5mwf.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (5mwf.pdb3.gz) 48 Kb
  • Biological Unit Coordinates (5mwf.pdb4.gz) 48 Kb
  • Biological Unit Coordinates (5mwf.pdb5.gz) 47 Kb
  • Biological Unit Coordinates (5mwf.pdb6.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5MWF
  • CSU: Contacts of Structural Units for 5MWF
  • Structure Factors (1982 Kb)
  • Retrieve 5MWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MWF from S2C, [Save to disk]
  • Re-refined 5mwf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MWF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mwf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mwf_C] [5mwf_A] [5mwf_F] [5mwf_D] [5mwf_E] [5mwf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MWF
  • Community annotation for 5MWF at PDBWiki (http://pdbwiki.org)

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