5V4B Transcription date Mar 08, 2017
title Crystal Structure Of The Skp1-Fbxw7-Disc1 Complex
authors Y.Li, G.S.Baillie, B.Hao
compound source
Molecule: S-Phase Kinase-Associated Protein 1,S-Phase Kinas Associated Protein 1;
Chain: A
Synonym: Cyclin-Acdk2-Associated Protein P19,P19a,Organ Of Protein 2,Ocp-2,Organ Of Corti Protein II,Ocp-II,Rna Polyme Elongation Factor-Like Protein,Siii,Transcription Elongatio Polypeptide 1-Like,P19skp1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Skp1, Emc19, Ocp2, Skp1a, Tceb1l
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: F-Boxwd Repeat-Containing Protein 7
Chain: B
Fragment: Unp Residues 183-626
Synonym: Archipelago Homolog,Hago,F-Box And Wd-40 Domain-Co Protein 7,F-Box Protein Fbx30,Sel-10,Hcdc4;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fbxw7, Fbw7, Fbx30, Sel10
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet15b

Molecule: Disc1 Peptide
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: I 41 2 2
R_factor 0.184 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
233.514 233.514 108.438 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand IMD, SEP, SO4, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFBXW7 regulates DISC1 stability via the ubiquitin-proteosome system., Yalla K, Elliott C, Day JP, Findlay J, Barratt S, Hughes ZA, Wilson L, Whiteley E, Popiolek M, Li Y, Dunlop J, Killick R, Adams DR, Brandon NJ, Houslay MD, Hao B, Baillie GS, Mol Psychiatry. 2017 Jul 20. doi: 10.1038/mp.2017.138. PMID:28727686
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (5v4b.pdb1.gz) 201 Kb
  • Biological Unit Coordinates (5v4b.pdb2.gz) 797 Kb
  • LPC: Ligand-Protein Contacts for 5V4B
  • CSU: Contacts of Structural Units for 5V4B
  • Structure Factors (949 Kb)
  • Retrieve 5V4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V4B from S2C, [Save to disk]
  • View 5V4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V4B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5v4b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v4b_A] [5v4b_B] [5v4b_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V4B
  • Community annotation for 5V4B at PDBWiki (http://pdbwiki.org)

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