5ZOJ Dna Binding Protein date Apr 13, 2018
title Crystal Structure Of Human Smad2-Man1 Complex
authors K.Miyazono, Y.Ohno, T.Ito, M.Tanokura
compound source
Molecule: Mothers Against Decapentaplegic Homolog 2
Chain: A, B, C
Fragment: Unp Residues 262-458
Synonym: Mothers Against Dpp Homolog 2,Jv18-1,Mad-Related P Hmad-2,Smad Family Member 2,Hsmad2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smad2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inner Nuclear Membrane Protein Man1
Chain: D, E
Fragment: Unp Residues 762-890
Synonym: Lem Domain-Containing Protein 3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Man1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.242 R_Free 0.269
length a length b length c angle alpha angle beta angle gamma
176.813 176.813 73.854 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.79 Å
A, C, B

D, E

Primary referenceStructural basis for receptor-regulated SMAD recognition by MAN1., Miyazono KI, Ohno Y, Wada H, Ito T, Fukatsu Y, Kurisaki A, Asashima M, Tanokura M, Nucleic Acids Res. 2018 Oct 13. pii: 5128924. doi: 10.1093/nar/gky925. PMID:30321401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (283 Kb) [Save to disk]
  • Biological Unit Coordinates (5zoj.pdb1.gz) 273 Kb
  • CSU: Contacts of Structural Units for 5ZOJ
  • Structure Factors (850 Kb)
  • Retrieve 5ZOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZOJ from S2C, [Save to disk]
  • View 5ZOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZOJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zoj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zoj_C] [5zoj_A] [5zoj_E] [5zoj_D] [5zoj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZOJ
  • Community annotation for 5ZOJ at PDBWiki (http://pdbwiki.org)

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