6J7Z Hydrolase date Jan 18, 2019
title Human Mitochondrial Oligoribonuclease In Complex With Rna
authors L.Y.Chu, S.Agrawal, H.S.Yuan
compound source
Molecule: Oligoribonuclease, Mitochondrial
Chain: A, B
Synonym: Rna Exonuclease 2 Homolog,Small Fragment Nuclease
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rexo2, Sfn, Smfn, Cgi-114
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Rna (5'-R(Pupu)-3')
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 2 2 21
R_factor 0.206 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
86.192 125.892 86.008 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand CIT, MG enzyme Hydrolase E.C.3.1 BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (6j7z.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 6J7Z
  • CSU: Contacts of Structural Units for 6J7Z
  • Structure Factors (840 Kb)
  • Retrieve 6J7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J7Z from S2C, [Save to disk]
  • View 6J7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6J7Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6j7z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j7z_C] [6j7z_B] [6j7z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6J7Z
  • Community annotation for 6J7Z at PDBWiki (http://pdbwiki.org)

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