6NFX Protein Binding date Dec 21, 2018
title Mbtd1 Mbt Repeats
authors H.Zhang, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Mbt Domain-Containing Protein 1,Enhancer Of Polyc Homolog 1;
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mbtd1, Epc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: C 1 2 1
R_factor 0.185 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.607 124.724 70.057 90.00 92.88 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand GOL, NA, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for EPC1-Mediated Recruitment of MBTD1 into the NuA4/TIP60 Acetyltransferase Complex., Zhang H, Devoucoux M, Song X, Li L, Ayaz G, Cheng H, Tempel W, Dong C, Loppnau P, Cote J, Min J, Cell Rep. 2020 Mar 24;30(12):3996-4002.e4. doi: 10.1016/j.celrep.2020.03.003. PMID:32209463
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (6nfx.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 6NFX
  • CSU: Contacts of Structural Units for 6NFX
  • Structure Factors (3545 Kb)
  • Retrieve 6NFX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NFX from S2C, [Save to disk]
  • View 6NFX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NFX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nfx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nfx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NFX
  • Community annotation for 6NFX at PDBWiki (http://pdbwiki.org)

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