1UB5 Immune System date Mar 30, 2003
title Crystal Structure Of Antibody 19g2 With Hapten At 100k
authors A.B.Beuscher, P.Wirsching, R.A.Lerner, K.Janda, R.C.Stevens
compound source
Molecule: Antibody 19g2, Alpha Chain
Chain: H, A
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell: Hybridoma Cell

Molecule: Antibody 19g2, Beta Chain
Chain: L, B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell: Hybridoma Cell
symmetry Space Group: C 1 2 1
R_factor 0.248 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
195.933 61.058 92.589 90.00 117.05 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SPB enzyme
related structures by homologous chain: 1FE8, 1JTT, 1NBV, 1UZ6
Gene
Ontology
ChainFunctionProcessComponent
L, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (1ub5.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (1ub5.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1UB5
  • CSU: Contacts of Structural Units for 1UB5
  • Likely Quarternary Molecular Structure file(s) for 1UB5
  • Structure Factors (868 Kb)
  • Retrieve 1UB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UB5 from S2C, [Save to disk]
  • Re-refined 1ub5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UB5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UB5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ub5a1, region A:1-116 [Jmol] [rasmolscript] [script source]
        - Domain d1ub5a2, region A:117-214 [Jmol] [rasmolscript] [script source]
        - Domain d1ub5b1, region B:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1ub5b2, region B:114-214 [Jmol] [rasmolscript] [script source]
        - Domain d1ub5h1, region H:1-116 [Jmol] [rasmolscript] [script source]
        - Domain d1ub5h2, region H:117-214 [Jmol] [rasmolscript] [script source]
        - Domain d1ub5l1, region L:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1ub5l2, region L:114-214 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ub5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ub5_A] [1ub5] [1ub5_H] [1ub5_B] [1ub5_L]
  • SWISS-PROT database: [P01867]
  • Domain organization of [IGG2B_MOUSE] by SWISSPFAM
  • Domains found in 1UB5: [IG_like] [IGv ] by SMART
  • Other resources with information on 1UB5
  • Community annotation for 1UB5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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