2NZ6	Hydrolase	date	Nov 22, 2006
title	Crystal Structure Of The Ptprj Inactivating Mutant C1239s
authors	E.Ugochukwu, A.Barr, P.Savitsky, A.C.W.Pike, G.Bunkoczi, M.Sundst J.Weigelt, C.H.Arrowsmith, A.Edwards, F.Von Delft, S.Knapp, Stru Genomics Consortium (Sgc)
compound		source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Eta Chain: A Fragment: Tyrosine-Protein Phosphatase Synonym: Protein-Tyrosine Phosphatase Eta, R-Ptp-Eta, Hptp Protein- Tyrosine Phosphatase Receptor Type J, Density-Enha Phosphatase 1, Dep-1, Cd148 Antigen; Ec: 3.1.3.48 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptprj Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: H 3	R_factor 0.182 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.521 88.521 118.950 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CL, NI, PO4	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Large-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (2nz6.pdb1.gz) 50 Kb Biological Unit Coordinates (2nz6.pdb2.gz) 146 Kb LPC: Ligand-Protein Contacts for 2NZ6 CSU: Contacts of Structural Units for 2NZ6 Likely Quarternary Molecular Structure file(s) for 2NZ6 Structure Factors (244 Kb) Retrieve 2NZ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NZ6 from S2C, [Save to disk] Re-refined 2nz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NZ6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NZ6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NZ6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nz6] [2nz6_A] SWISS-PROT database: [Q12913] Domain organization of [PTPRJ_HUMAN] by SWISSPFAM Domain found in 2NZ6: [PTPc ] by SMART

Other resources with information on 2NZ6

Community annotation for 2NZ6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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