3GG0 Hydrolase, Signaling Protein date Feb 27, 2009
title Klebsiella Pneumoniae Blrp1 Ph 9.0 Manganesecy-Digmp Comple
authors T.Barends, E.Hartmann, J.Griese, T.Beitlich, N.Kirienko, D.Ryjenk J.Reinstein, R.Shoeman, M.Gomelsky, I.Schlichting
compound source
Molecule: Klebsiella Pneumoniae Blrp1
Chain: A, B
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae Subsp. Pneumonia 78578;
Organism_taxid: 272620
Gene: Blrp, Kpn78578_15680, Kpn_01598
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De-3)
Expression_system_vector_type: Pet28-Derived
symmetry Space Group: P 21 21 21
R_factor 0.240 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.020 96.890 126.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand C2E, FMN, MN enzyme
Gene KPN78578 ; KPN
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • blue light photoreceptor act...


  • Primary referenceStructure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase., Barends TR, Hartmann E, Griese JJ, Beitlich T, Kirienko NV, Ryjenkov DA, Reinstein J, Shoeman RL, Gomelsky M, Schlichting I, Nature. 2009 Jun 18;459(7249):1015-8. PMID:19536266
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (3gg0.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 3GG0
  • CSU: Contacts of Structural Units for 3GG0
  • Likely Quarternary Molecular Structure file(s) for 3GG0
  • Structure Factors (220 Kb)
  • Retrieve 3GG0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GG0 from S2C, [Save to disk]
  • Re-refined 3gg0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GG0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GG0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GG0, from MSDmotif at EBI
  • Fold representative 3gg0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gg0_B] [3gg0] [3gg0_A]
  • SWISS-PROT database: [A6T8V8]
  • Domain organization of [A6T8V8_KLEP7] by SWISSPFAM
  • Domains found in 3GG0: [BLUF] [EAL ] by SMART
  • Other resources with information on 3GG0
  • Community annotation for 3GG0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science