6S1M	Replication	date	Jun 19, 2019
title	Human Polymerase Delta Holoenzyme Conformer 1
authors	C.Lancey, S.M.Hamdan, A.De Biasio
compound		source
Molecule: Dna Polymerase Delta Catalytic Subunit Chain: A Synonym: Dna Polymerase Subunit Delta P125 Ec: 2.7.7.7,3.1.11.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pold1, Pold Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Bacmid
Molecule: Dna Polymerase Delta Subunit 2 Chain: B Synonym: Dna Polymerase Delta Subunit P50 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pold2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Bacmid
Molecule: Dna Polymerase Delta Subunit 3 Chain: C Synonym: Dna Polymerase Delta Subunit C,Dna Polymerase Delt P66,Dna Polymerase Delta Subunit P68; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pold3, Kiaa0039 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Bacmid
Molecule: Dna Polymerase Delta Subunit 4 Chain: D Synonym: Dna Polymerase Delta Subunit P12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pold4, Polds Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Bacmid
Molecule: Proliferating Cell Nuclear Antigen Chain: E, F, G Synonym: Pcna,Cyclin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pcna Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Dna Primer Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Template Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.27 Å
ligand	DOC, SF4, TTP, ZN	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A nucleotide-excision repair c... B C D F, G, E

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (381 Kb) [Save to disk] Biological Unit Coordinates (6s1m.pdb1.gz) 372 Kb LPC: Ligand-Protein Contacts for 6S1M CSU: Contacts of Structural Units for 6S1M Retrieve 6S1M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6S1M from S2C, [Save to disk]

View 6S1M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6S1M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6s1m_G] [6s1m_D] [6s1m_F] [6s1m_A] [6s1m_C] [6s1m_E] [6s1m_T] [6s1m_P] [6s1m_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6S1M

Community annotation for 6S1M at PDBWiki (http://pdbwiki.org)

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