1MJ1 Ribosome date Aug 26, 2002
title Fitting The Ternary Complex Of Ef-Tutrnagtp And Ribosomal Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome
authors H.Stark, M.V.Rodnina, H.J.Wieden, F.Zemlin, W.Wintermeyer, M.Van
compound source
Molecule: Phe-Trna
Chain: D, C
Other_details: Taken From Pdb Entries 1gix, 1tra
 Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Sarcin-Ricin Loop Of 23srrna
Chain: Q
Other_details: Taken From Pdb Entry 1giy
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Helix 69 Of 23s Rrna
Chain: R
Other_details: Taken From Pdb Entry 1giy
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Elongation Factor Tu
Chain: A
Other_details: Taken From Pdb Entry 1b23
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: S12 Ribosomal Protein
Chain: O
Other_details: Taken From Pdb Entry 1gix
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: S13 Ribosomal Protein
Chain: P
Other_details: Taken From Pdb Entry 1gix
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: L11 Ribosomal Protein
Chain: L
Other_details: Taken From Pdb Entry 1giy
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.00 Å
ligand 1MA, 2MG, 5MC, 5MU, 7MG, H2U, M2G, OMC, OMG, PSU, YG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


L


O


P


Primary referenceRibosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex., Stark H, Rodnina MV, Wieden HJ, Zemlin F, Wintermeyer W, van Heel M, Nat Struct Biol 2002 Nov;9(11):849-54. PMID:12379845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1mj1.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 1MJ1
  • CSU: Contacts of Structural Units for 1MJ1
  • Likely Quarternary Molecular Structure file(s) for 1MJ1
  • Retrieve 1MJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MJ1 from S2C, [Save to disk]
    • View 1MJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MJ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MJ1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mj1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mj1c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1mj1d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1mj1l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1mj1o_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1mj1p_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1mj1q_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1mj1r_, region R [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mj1_L] [1mj1_Q] [1mj1_P] [1mj1_A] [1mj1_D] [1mj1_R] [1mj1_C] [1mj1] [1mj1_O]
  • SWISS-PROT database: [P0A7S3]
  • Domain organization of [RS12_ECOLI] by SWISSPFAM
  • Domain found in 1MJ1: [RL11 ] by SMART
    • Other resources with information on 1MJ1
  • Community annotation for 1MJ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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