1ZSV Oxidoreductase date May 25, 2005
title Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase
authors A.P.Turnbull, C.Johansson, P.Savitsky, K.Guo, A.Edwards, C.Arrowsmith, M.Sundstrom, F.Von Delft, U.Oppermann, Structural Genomics Consortium (Sgc)
compound source
Molecule: Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase;
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ltb4dh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 43
R_factor 0.195 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.543 92.543 202.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL enzyme
related structures by homologous chain: 1V3T
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (1zsv.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (1zsv.pdb2.gz) 104 Kb
  • Biological Unit Coordinates (1zsv.pdb3.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 1ZSV
  • CSU: Contacts of Structural Units for 1ZSV
  • Likely Quarternary Molecular Structure file(s) for 1ZSV
  • Structure Factors (1246 Kb)
  • Retrieve 1ZSV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZSV from S2C, [Save to disk]
  • Re-refined 1zsv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZSV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZSV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZSV, from MSDmotif at EBI
  • Fold representative 1zsv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zsv_C] [1zsv_D] [1zsv] [1zsv_A] [1zsv_B]
  • SWISS-PROT database: [Q14914]
  • Domain organization of [PTGR1_HUMAN] by SWISSPFAM
  • Other resources with information on 1ZSV
  • Community annotation for 1ZSV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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