2ERR Rna Binding Protein date Oct 25, 2005
title Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In Complex With Ugcaugu
authors F.H.Allain, S.D.Auweter
compound source
Molecule: Ataxin-2-Binding Protein 1
Chain: A
Fragment: Rna Binding Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: A2bp1, A2bp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a+

Molecule: Ugcaugu
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis of RNA recognition by the human alternative splicing factor Fox-1., Auweter SD, Fasan R, Reymond L, Underwood JG, Black DL, Pitsch S, Allain FH, EMBO J. 2006 Jan 11;25(1):163-73. Epub 2005 Dec 15. PMID:16362037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (829 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2ERR
  • Original NMR restraints for 2ERR from PDB
  • Retrieve 2ERR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ERR from S2C, [Save to disk]
  • View 2ERR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ERR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ERR, from MSDmotif at EBI
  • Fold representative 2err from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2err_B] [2err_A] [2err]
  • SWISS-PROT database: [Q9NWB1]
  • Domain organization of [FOX1A_HUMAN] by SWISSPFAM
  • Domain found in 2ERR: [RRM ] by SMART
  • Other resources with information on 2ERR
  • Community annotation for 2ERR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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