2F1X Hydrolase date Nov 15, 2005
title Crystal Structure Of The Traf-Like Domain Of Hauspusp7 Bound To A P53 Peptide
authors M.Hu, L.Gu, P.D.Jeffrey, Y.Shi
compound source
Molecule: Hauspusp7
Chain: A, B
Fragment: P53 Peptide Fusion With Hausp N Terminal
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: C 1 2 1
R_factor 0.227 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.756 39.560 101.885 90.00 105.32 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceStructural Basis of Competitive Recognition of p53 and MDM2 by HAUSP/USP7: Implications for the Regulation of the p53-MDM2 Pathway., Hu M, Gu L, Li M, Jeffrey PD, Gu W, Shi Y, PLoS Biol. 2006 Feb;4(2):e27. Epub 2006 Jan 17. PMID:16402859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2f1x.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (2f1x.pdb2.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2F1X
  • Likely Quarternary Molecular Structure file(s) for 2F1X
  • Retrieve 2F1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F1X from S2C, [Save to disk]
    • View 2F1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2F1X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F1X, from MSDmotif at EBI
  • Fold representative 2f1x from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f1x_A] [2f1x_B]
  • SWISS-PROT database: [P04637] [Q93009]
  • Domain organization of [P53_HUMAN] [UBP7_HUMAN] by SWISSPFAM
  • Domain found in 2F1X: [MATH ] by SMART
  • Alignments of the sequence of 2F1X with the sequences similar proteins can be viewed for 2F1X's classification [P53_HUMAN] [UBP7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] [UBP7_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2F1X
  • Community annotation for 2F1X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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