2NZ6 Hydrolase date Nov 22, 2006
title Crystal Structure Of The Ptprj Inactivating Mutant C1239s
authors E.Ugochukwu, A.Barr, P.Savitsky, A.C.W.Pike, G.Bunkoczi, M.Sundst J.Weigelt, C.H.Arrowsmith, A.Edwards, F.Von Delft, S.Knapp, Stru Genomics Consortium (Sgc)
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Eta
Chain: A
Fragment: Tyrosine-Protein Phosphatase
Synonym: Protein-Tyrosine Phosphatase Eta, R-Ptp-Eta, Hptp Protein- Tyrosine Phosphatase Receptor Type J, Density-Enha Phosphatase 1, Dep-1, Cd148 Antigen;
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptprj
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: H 3
R_factor 0.182 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.521 88.521 118.950 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, NI, PO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2nz6.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (2nz6.pdb2.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 2NZ6
  • CSU: Contacts of Structural Units for 2NZ6
  • Likely Quarternary Molecular Structure file(s) for 2NZ6
  • Structure Factors (244 Kb)
  • Retrieve 2NZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NZ6 from S2C, [Save to disk]
  • Re-refined 2nz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NZ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NZ6, from MSDmotif at EBI
  • Fold representative 2nz6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nz6] [2nz6_A]
  • SWISS-PROT database: [Q12913]
  • Domain organization of [PTPRJ_HUMAN] by SWISSPFAM
  • Domain found in 2NZ6: [PTPc ] by SMART
  • Other resources with information on 2NZ6
  • Community annotation for 2NZ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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