3H2V Cell Adhesion date Apr 14, 2009
title Human Raver1 Rrm1 Domain In Complex With Human Vinculin Tail Domain Vt
authors J.H.Lee, E.S.Rangarajan, S.D.Yogesha, T.Izard
compound source
Molecule: Vinculin
Chain: A, B, C, D
Fragment: C-Terminal Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Raver-1
Chain: E, F, G, H
Fragment: Rrm 1 Domain
Synonym: Ribonucleoprotein Ptb-Binding 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Raver1, Kiaa1978
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.210 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.818 70.921 99.342 89.77 90.04 104.04
method X-Ray Diffractionresolution 2.90 Å
Primary referenceRaver1 interactions with vinculin and RNA suggest a feed-forward pathway in directing mRNA to focal adhesions., Lee JH, Rangarajan ES, Yogesha SD, Izard T, Structure. 2009 Jun 10;17(6):833-42. PMID:19523901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (3h2v.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (3h2v.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3h2v.pdb3.gz) 40 Kb
  • Biological Unit Coordinates (3h2v.pdb4.gz) 41 Kb
  • CSU: Contacts of Structural Units for 3H2V
  • Likely Quarternary Molecular Structure file(s) for 3H2V
  • Structure Factors (169 Kb)
  • Retrieve 3H2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H2V from S2C, [Save to disk]
  • Re-refined 3h2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H2V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H2V, from MSDmotif at EBI
  • Fold representative 3h2v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h2v_H] [3h2v_G] [3h2v_F] [3h2v] [3h2v_C] [3h2v_D] [3h2v_B] [3h2v_A] [3h2v_E]
  • SWISS-PROT database: [Q8IY67] [P18206]
  • Domain organization of [RAVR1_HUMAN] [VINC_HUMAN] by SWISSPFAM
  • Domain found in 3H2V: [RRM ] by SMART
  • Other resources with information on 3H2V
  • Community annotation for 3H2V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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