3U8Z Signaling Protein date Oct 17, 2011
title Human Merlin Ferm Domain
authors S.D.Yogesha, A.J.Sharff, M.Giovannini, G.Bricogne, T.Izard
compound source
Molecule: Merlin
Chain: A, B, C, D
Fragment: Ferm Domain (Unp Residues 20-312)
Synonym: Moesin-Ezrin-Radixin-Like Protein, Neurofibromin-2 Schwannomerlin, Schwannomin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nf2, Sch
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Ril
symmetry Space Group: P 41 21 2
R_factor 0.200 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.446 105.446 329.997 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.64 Å
Primary referenceUnfurling of the band 4.1, ezrin, radixin, moesin (FERM) domain of the merlin tumor suppressor., Yogesha SD, Sharff AJ, Giovannini M, Bricogne G, Izard T, Protein Sci. 2011 Oct 19. doi: 10.1002/pro.751. PMID:22012890
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk]
  • Biological Unit Coordinates (3u8z.pdb1.gz) 192 Kb
  • Biological Unit Coordinates (3u8z.pdb2.gz) 184 Kb
  • CSU: Contacts of Structural Units for 3U8Z
  • Structure Factors (1126 Kb)
  • Retrieve 3U8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U8Z from S2C, [Save to disk]
  • Re-refined 3u8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U8Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U8Z, from MSDmotif at EBI
  • Fold representative 3u8z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u8z_D] [3u8z_C] [3u8z_A] [3u8z_B] [3u8z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3U8Z: [B41] [FERM_C ] by SMART
  • Alignments of the sequence of 3U8Z with the sequences similar proteins can be viewed for 3U8Z's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3U8Z
  • Community annotation for 3U8Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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