4UTX Crystal structure of zebrafish Sirtuin 5 in complex with 3-nitro- propionylated CPS1-peptide date
authors Pannek, M., Gertz, M., Steegborn, C.
compound source
symmetry
R_factor
R_Free 0.26189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand 3NP, BEZ, DMS, EDO, EPE, NA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceChemical Probing of the Human Sirtuin 5 Active Site Reveals Its Substrate Acyl Specificity and Peptide-Based Inhibitors., Roessler C, Nowak T, Pannek M, Gertz M, Nguyen GT, Scharfe M, Born I, Sippl W, Steegborn C, Schutkowski M, Angew Chem Int Ed Engl. 2014 Aug 11. doi: 10.1002/anie.201402679. PMID:25111069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (4utx.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (4utx.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4UTX
  • CSU: Contacts of Structural Units for 4UTX
  • Structure Factors (124 Kb)
  • Retrieve 4UTX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UTX from S2C, [Save to disk]
  • Re-refined 4utx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UTX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UTX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UTX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4utx_A] [4utx_B] [4utx] [4utx_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UTX: [ZnF_C2HC ] by SMART
  • Other resources with information on 4UTX
  • Community annotation for 4UTX at PDBWiki (http://pdbwiki.org)

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