5LPN	Endocytosis	date	Aug 14, 2016
title	Structure Of Human Rab10 In Complex With The Bmerb Domain Of
authors	A.Rai, A.Oprisko, J.Campos, Y.Fu, T.Friese, A.Itzen, R.S.Goody, M.P E.M.Gazdag
compound		source
Molecule: Ras-Related Protein Rab-10 Chain: A, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab10 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Protein-Methionine Sulfoxide Oxidase Mical1 Chain: B Fragment: Unp Residues 918-1067 Synonym: Molecule Interacting With Casl Protein 1,Mical-1,N Interacting Protein With Calponin Homology And Lim Domains; Ec: 1.14.13.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mical1, Mical, Nical Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.244 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.390 59.000 198.180 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	GNP, MG	enzyme	Oxidoreductase E.C.1.14.13 BRENDA
Gene Ontology	Chain Function Process Component A, C B
Primary reference	bMERB domains are bivalent Rab8 family effectors evolved by gene duplication., Rai A, Oprisko A, Campos J, Fu Y, Friese T, Itzen A, Goody RS, Gazdag EM, Muller MP, Elife. 2016 Aug 23;5. pii: e18675. doi: 10.7554/eLife.18675. PMID:27552051

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (5lpn.pdb1.gz) 159 Kb LPC: Ligand-Protein Contacts for 5LPN CSU: Contacts of Structural Units for 5LPN Structure Factors (151 Kb) Retrieve 5LPN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LPN from S2C, [Save to disk] Re-refined 5lpn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LPN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LPN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lpn] [5lpn_B] [5lpn_C] [5lpn_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5LPN: [DUF3585] [RAB ] by SMART

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