5ME0 Ribosome date Nov 14, 2016
title Structure Of The 30s Pre-Initiation Complex 1 (30s Ic-1) Sta Ge81112
authors J.P.Lopez-Alonso, A.Fabbretti, T.Kaminishi, I.Iturrioz, L.Brandi Carton, C.Gualerzi, P.Fucini, S.Connell
compound source
Molecule: 16s Ribosomal Rna
Chain: A
Other_details: Taken From Pdb Entry 4ybb
 Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S2
Chain: B
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S3
Chain: C
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S4
Chain: D
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S5
Chain: E
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S6
Chain: F
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S7
Chain: G
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S8
Chain: H
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S9
Chain: I
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S10
Chain: J
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S11
Chain: K
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S12
Chain: L
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S13
Chain: M
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S14
Chain: N
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S15
Chain: O
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S16
Chain: P
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S17
Chain: Q
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S18
Chain: R
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S19
Chain: S
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S20
Chain: T
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S21
Chain: U
Other_details: Taken From Pdb Entry 4ybb
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: Translation Initiation Factor If-1
Chain: V
Engineered: Yes
Other_details: Taken From Pdb Entry 1hr0
Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579
Gene: Infa, Ttha1669
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Translation Initiation Factor If-2
Chain: W
Engineered: Yes
Other_details: Taken From Pdb Entry 3jcn
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Infb, Gicd, Ssyg, B3168, Jw3137
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Translation Initiation Factor If-3
Chain: Y
Engineered: Yes
Other_details: Taken From Pdb Entry 1tif
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Gene: Infc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Translation Initiation Factor If-3
Chain: Z
Engineered: Yes
Other_details: Taken From Pdb Entry 2ife
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Infc, Fit, Srja, B1718, Jw5829
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fmet-Trna
Chain: X
Other_details: Taken From Pdb Entry 3jcn
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.50 Å
ligand 2MG, 4OC, 4SU, 5MC, 5MU, D2T, FME, G7M, H2U, MA6, PSU, UR3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O
  • mRNA binding involved in pos...


    • P


    Q


    R


    S


    T
  • ornithine decarboxylase inhi...


    • U


    V


    W


    Y


    Z


    Primary referenceStructure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways., Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR, Nucleic Acids Res. 2016 Dec 15. pii: gkw1251. PMID:27986852
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1176 Kb) [Save to disk]
  • Biological Unit Coordinates (5me0.pdb1.gz) 1162 Kb
  • LPC: Ligand-Protein Contacts for 5ME0
  • CSU: Contacts of Structural Units for 5ME0
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  • View one-letter amino acid or nucleotide sequence for each chain: [5me0_I] [5me0_M] [5me0_P] [5me0_Z] [5me0_A] [5me0_C] [5me0_U] [5me0_B] [5me0_H] [5me0_Y] [5me0] [5me0_D] [5me0_G] [5me0_S] [5me0_K] [5me0_R] [5me0_T] [5me0_E] [5me0_V] [5me0_L] [5me0_O] [5me0_Q] [5me0_X] [5me0_N] [5me0_W] [5me0_F] [5me0_J]
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