6C1A	Dna Binding Protein Dna	date	Jan 04, 2018
title	Mbd2 In Complex With Methylated Dna
authors	K.Liu, C.Xu, W.Tempel, C.H.Arrowsmith, C.Bountra, A.M.Edwards, J.M Structural Genomics Consortium (Sgc)
compound		source
Molecule: Methyl-Cpg-Binding Domain Protein 2 Chain: A, B, E, F Synonym: Demethylase,Dmtase,Methyl-Cpg-Binding Protein Mbd2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mbd2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-V2r-Prare2 Expression_system_plasmid: Pet28-Mhl
Molecule: Dna Strand 1 Chain: C, G Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Synthetic
Molecule: Complement To Dna Strand 1 Chain: D, H Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Synthetic
symmetry	Space Group: P 1	R_factor 0.231 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.533 39.875 105.151 83.97 85.70 62.75
method	X-Ray Diffraction	resolution	2.05 Å
ligand	5CM, UNX	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B
Primary reference	Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA., Liu K, Xu C, Lei M, Yang A, Loppnau P, Hughes TR, Min J, J Biol Chem. 2018 Mar 22. pii: RA118.001785. doi: 10.1074/jbc.RA118.001785. PMID:29567833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk] Biological Unit Coordinates (6c1a.pdb1.gz) 65 Kb Biological Unit Coordinates (6c1a.pdb2.gz) 64 Kb LPC: Ligand-Protein Contacts for 6C1A CSU: Contacts of Structural Units for 6C1A Structure Factors (2173 Kb) Retrieve 6C1A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6C1A from S2C, [Save to disk]

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Visual 3D analysis of 6C1A

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6c1a_D] [6c1a_B] [6c1a_G] [6c1a_H] [6c1a_F] [6c1a_C] [6c1a_E] [6c1a_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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