1NUE Phosphotransferase date Oct 06, 1995
title X-Ray Structure Of Nm23 Human Nucleoside Diphosphate Kinase B Complexed With Gdp At 2 Angstroms Resolution
authors S.Morera, M.L.Lacombe, X.Yingwu, G.Lebras, J.Janin
compound source
Molecule: Nucleoside Diphosphate Kinase
Chain: A, B, C, D, E, F
Ec: 2.7.4.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.030 87.370 162.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GDP, MG enzyme Transferase E.C.2.7.4.6 BRENDA
related structures by homologous chain: 1KDN, 1NDC
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • protein histidine kinase act...


  • Primary referenceX-ray structure of human nucleoside diphosphate kinase B complexed with GDP at 2 A resolution., Morera S, Lacombe ML, Xu Y, LeBras G, Janin J, Structure 1995 Dec 15;3(12):1307-14. PMID:8747457
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (1nue.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 1NUE
  • CSU: Contacts of Structural Units for 1NUE
  • Likely Quarternary Molecular Structure file(s) for 1NUE
  • Retrieve 1NUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NUE from S2C, [Save to disk]
  • View 1NUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NUE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NUE, from MSDmotif at EBI
  • Genome occurence of 1NUE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nuea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nueb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nuec_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1nued_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1nuee_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1nuef_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 1nue from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nue_F] [1nue_B] [1nue_D] [1nue_A] [1nue_C] [1nue] [1nue_E]
  • SWISS-PROT database: [P22392]
  • Domain organization of [NDKB_HUMAN] by SWISSPFAM
  • Domain found in 1NUE: [NDK ] by SMART
  • Other resources with information on 1NUE
  • Community annotation for 1NUE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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