1V54 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CDL, CHD, CU, CUA, DMU, FME, HEA, MG, NA, PEK, PGV, PSC, SAC, TGL, TPO, UNX, ZN enzyme
related structures by homologous chain: 1V55
Gene
Ontology
ChainFunctionProcessComponent
B, O
  • cytochrome-c oxidase activit...


    • C, P
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • E, R


    H, U


    I, V
  • cytochrome-c oxidase activit...


    • L, Y


    M, Z


    N, A


    Q, D


    S, F


    T, G


    W, J


    X, K


    Primary referenceThe low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process., Tsukihara T, Shimokata K, Katayama Y, Shimada H, Muramoto K, Aoyama H, Mochizuki M, Shinzawa-Itoh K, Yamashita E, Yao M, Ishimura Y, Yoshikawa S, Proc Natl Acad Sci U S A 2003 Dec 23;100(26):15304-9. Epub 2003 Dec 12. PMID:14673090
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (670 Kb) [Save to disk]
  • Biological Unit Coordinates (1v54.pdb1.gz) 649 Kb
  • LPC: Ligand-Protein Contacts for 1V54
  • CSU: Contacts of Structural Units for 1V54
  • Likely Quarternary Molecular Structure file(s) for 1V54
  • Retrieve 1V54 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V54 from S2C, [Save to disk]
    • View 1V54 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v54] [1v54_A] [1v54_B] [1v54_C] [1v54_D] [1v54_E] [1v54_F] [1v54_G] [1v54_H] [1v54_I] [1v54_J] [1v54_K] [1v54_L] [1v54_M] [1v54_N] [1v54_O] [1v54_P] [1v54_Q] [1v54_R] [1v54_S] [1v54_T] [1v54_U] [1v54_V] [1v54_W] [1v54_X] [1v54_Y] [1v54_Z]
  • SWISS-PROT database: [P00396] [P68530] [P00415] [P00423] [P00426] [P00428] [P04038] [P13183] [P00430] [P10175] [P07471] [P00429] [P07470]
  • Belongs to the proton-translocating cytochrome oxidase (cox) superfamily according to TCDB.

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